P A U P * Version 4.0b10 for 32-bit Microsoft Windows Tue Jul 26 13:59:20 2005 -----------------------------NOTICE----------------------------- This is a beta-test version. Please report any crashes, apparent calculation errors, or other anomalous results. There are no restrictions on publication of results obtained with this version, but you should check the WWW site frequently for bug announcements and/or updated versions. See the README file on the distribution media for details. ---------------------------------------------------------------- Note: Outgroup status not changed by Outgroup or Ingroup command. T-PTP test for monophyly with heuristic search: Testing constraint-tree "mp" Starting seed = 331300678 Number of replicates = 100 Only ingroup taxa randomized Optimality criterion = parsimony Character-status summary: Of 3096 total characters: All characters are of type 'unord' All characters have equal weight 2608 characters are constant 170 variable characters are parsimony-uninformative Number of parsimony-informative characters = 318 Starting tree(s) obtained via stepwise addition Addition sequence: simple (reference taxon = Anaecypri) Number of trees held at each step during stepwise addition = 1 Branch-swapping algorithm: tree-bisection-reconnection (TBR) Steepest descent option not in effect Initial 'MaxTrees' setting = 100 Branches collapsed (creating polytomies) if maximum branch length is zero 'MulTrees' option in effect Trees are unrooted 100 permutation test replicates completed Time used = 3.78 sec Results of T-PTP test: Tree length Number of difference** replicates ------------------------- 1* 1 -53 1 -56 1 -58 2 -59 2 -60 1 -61 1 -62 2 -65 5 -66 4 -67 4 -68 2 -69 3 -70 2 -71 2 -72 2 -73 6 -74 2 -75 5 -76 4 -77 2 -78 3 -79 2 -80 2 -81 3 -82 2 -83 3 -84 6 -85 3 -86 4 -87 2 -88 3 -89 2 -90 4 -93 1 -94 2 -95 1 -96 1 -97 1 -99 1 * = length difference for original (unpermuted) data ** = length of shortest tree not compatible with constraints minus length of shortest tree compatible with constraints P = 0.010000